change names

(bzr r289)

1 files changed, 0 insertions, 1371 deletions

diff --git a/src/trace/siox-segmentator.cpp b/src/trace/siox-segmentator.cpp
deleted file mode 100644
index 31d99ca03..000000000
--- a/src/trace/siox-segmentator.cpp
+++ /dev/null
@@ -1,1371 +0,0 @@
-/*
-   Copyright 2005, 2006 by Gerald Friedland, Kristian Jantz and Lars Knipping
-
-   Conversion to C++ for Inkscape by Bob Jamison
-
-   Licensed under the Apache License, Version 2.0 (the "License");
-   you may not use this file except in compliance with the License.
-   You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
-   Unless required by applicable law or agreed to in writing, software
-   distributed under the License is distributed on an "AS IS" BASIS,
-   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-   See the License for the specific language governing permissions and
-   limitations under the License.
- */
-#include "siox-segmentator.h"
-
-#include <string>
-
-#include <stdarg.h> //for error() and trace()
-#include <math.h>   //sqrt(), pow(), round(), etc
-
-
-namespace org
-{
-namespace siox
-{
-
-//########################################################################
-//##  U T I L S    (originally Utils.java)
-//########################################################################
-
-/**
- * Collection of auxiliary image processing methods used by the
- * SioxSegmentator mainly for postprocessing.
- *
- * @author G. Friedland, K. Jantz, L. Knipping
- * @version 1.05
- *
- * Conversion to C++ by Bob Jamison
- *
- */
-
-
-/** Caches color conversion values to speed up RGB->CIELAB conversion.*/
-static std::map<long, CLAB> RGB_TO_LAB;
-
-//forward decls
-static void premultiplyMatrix(float alpha, float *cm, int cmSize);
-//static float colordiffsq(long rgb0, long rgb1);
-//static int getAlpha(long argb);
-static int getRed(long rgb);
-static int getGreen(long rgb);
-static int getBlue(long rgb);
-//static long packPixel(int a, int r, int g, int b);
-static CLAB rgbToClab(long rgb);
-
-/**
- * Applies the morphological dilate operator.
- *
- * Can be used to close small holes in the given confidence matrix.
- *
- * @param cm Confidence matrix to be processed.
- * @param xres Horizontal resolution of the matrix.
- * @param yres Vertical resolution of the matrix.
- */
-static void dilate(float *cm, int xres, int yres)
-{
-    for (int y=0; y<yres; y++) {
-        for (int x=0; x<xres-1; x++) {
-            int idx=(y*xres)+x;
-            if (cm[idx+1]>cm[idx])
-                cm[idx]=cm[idx+1];
-            }
-        }
-    for (int y=0; y<yres; y++) {
-            for (int x=xres-1; x>=1; x--) {
-            int idx=(y*xres)+x;
-            if (cm[idx-1]>cm[idx])
-                cm[idx]=cm[idx-1];
-        }
-    }
-    for (int y=0; y<yres-1; y++) {
-        for (int x=0; x<xres; x++) {
-        int idx=(y*xres)+x;
-        if (cm[((y+1)*xres)+x] > cm[idx])
-            cm[idx]=cm[((y+1)*xres)+x];
-        }
-    }
-    for (int y=yres-1; y>=1; y--) {
-        for (int x=0; x<xres; x++) {
-        int idx=(y*xres)+x;
-        if (cm[((y-1)*xres)+x] > cm[idx])
-            cm[idx]=cm[((y-1)*xres)+x];
-        }
-    }
-}
-
-/**
- * Applies the morphological erode operator.
- *
- * @param cm Confidence matrix to be processed.
- * @param xres Horizontal resolution of the matrix.
- * @param yres Vertical resolution of the matrix.
- */
-static void erode(float *cm, int xres, int yres)
-{
-    for (int y=0; y<yres; y++) {
-        for (int x=0; x<xres-1; x++) {
-            int idx=(y*xres)+x;
-            if (cm[idx+1] < cm[idx])
-                cm[idx]=cm[idx+1];
-        }
-    }
-    for (int y=0; y<yres; y++) {
-        for (int x=xres-1; x>=1; x--) {
-            int idx=(y*xres)+x;
-            if (cm[idx-1] < cm[idx])
-                cm[idx]=cm[idx-1];
-        }
-    }
-    for (int y=0; y<yres-1; y++) {
-        for (int x=0; x<xres; x++) {
-            int idx=(y*xres)+x;
-            if (cm[((y+1)*xres)+x] < cm[idx])
-                cm[idx]=cm[((y+1)*xres)+x];
-        }
-    }
-    for (int y=yres-1; y>=1; y--) {
-        for (int x=0; x<xres; x++) {
-            int idx=(y*xres)+x;
-            if (cm[((y-1)*xres)+x] < cm[idx])
-                cm[idx]=cm[((y-1)*xres)+x];
-        }
-    }
-}
-
-/**
- * Normalizes the matrix to values to [0..1].
- *
- * @param cm The matrix to be normalized.
- */
-static void normalizeMatrix(float *cm, int cmSize)
-{
-    float max=0.0f;
-    for (int i=0; i<cmSize; i++) {
-        if (max<cm[i])
-            max=cm[i];
-    }
-    if (max<=0.0)
-        return;
-    else if (max==1.00)
-        return;
-
-    float alpha=1.00f/max;
-    premultiplyMatrix(alpha, cm, cmSize);
-}
-
-/**
- * Multiplies matrix with the given scalar.
- *
- * @param alpha The scalar value.
- * @param cm The matrix of values be multiplied with alpha.
- * @param cmSize The matrix length.
- */
-static void premultiplyMatrix(float alpha, float *cm, int cmSize)
-{
-    for (int i=0; i<cmSize; i++)
-        cm[i]=alpha*cm[i];
-}
-
-/**
- * Blurs confidence matrix with a given symmetrically weighted kernel.
- * <P>
- * In the standard case confidence matrix entries are between 0...1 and
- * the weight factors sum up to 1.
- *
- * @param cm The matrix to be smoothed.
- * @param xres Horizontal resolution of the matrix.
- * @param yres Vertical resolution of the matrix.
- * @param f1 Weight factor for the first pixel.
- * @param f2 Weight factor for the mid-pixel.
- * @param f3 Weight factor for the last pixel.
- */
-static void smoothcm(float *cm, int xres, int yres,
-                     float f1, float f2, float f3)
-{
-    for (int y=0; y<yres; y++) {
-        for (int x=0; x<xres-2; x++) {
-            int idx=(y*xres)+x;
-            cm[idx]=f1*cm[idx]+f2*cm[idx+1]+f3*cm[idx+2];
-        }
-    }
-    for (int y=0; y<yres; y++) {
-        for (int x=xres-1; x>=2; x--) {
-            int idx=(y*xres)+x;
-            cm[idx]=f3*cm[idx-2]+f2*cm[idx-1]+f1*cm[idx];
-        }
-    }
-    for (int y=0; y<yres-2; y++) {
-        for (int x=0; x<xres; x++) {
-            int idx=(y*xres)+x;
-            cm[idx]=f1*cm[idx]+f2*cm[((y+1)*xres)+x]+f3*cm[((y+2)*xres)+x];
-        }
-    }
-    for (int y=yres-1; y>=2; y--) {
-        for (int x=0; x<xres; x++) {
-            int idx=(y*xres)+x;
-            cm[idx]=f3*cm[((y-2)*xres)+x]+f2*cm[((y-1)*xres)+x]+f1*cm[idx];
-        }
-    }
-}
-
-/**
- * Squared Euclidian distance of p and q.
- * <P>
- * Usage hint: When only comparisons between Euclidian distances without
- * actual values are needed, the squared distance can be preferred
- * for being faster to compute.
- *
- * @param p First euclidian point coordinates.
- * @param pSize Length of coordinate array.
- * @param q Second euclidian point coordinates.
- *        Dimension must not be smaller than that of p.
- *        Any extra dimensions will be ignored.
- * @return Squared euclidian distance of p and q.
- * @see #euclid
- */
-static float sqrEuclidianDist(float *p, int pSize, float *q)
-{
-    float sum=0;
-    for (int i=0; i<pSize; i++)
-        sum+=(p[i]-q[i])*(p[i]-q[i]);
-    return sum;
-}
-
-/**
- * Squared Euclidian distance of p and q.
- * <P>
- * Usage hint: When only comparisons between Euclidian distances without
- * actual values are needed, the squared distance can be preferred
- * for being faster to compute.
- *
- * @param p CLAB value
- * @param q second CLAB value
- * @return Squared euclidian distance of p and q.
- * @see #euclid
- */
-static float sqrEuclidianDist(const CLAB &p, const CLAB &q)
-{
-    float sum=0;
-    sum += (p.C - q.C) * (p.C - q.C);
-    sum += (p.L - q.L) * (p.L - q.L);
-    sum += (p.A - q.A) * (p.A - q.A);
-    sum += (p.B - q.B) * (p.B - q.B);
-    return sum;
-}
-
-/**
- * Euclidian distance of p and q.
- *
- * @param p First euclidian point coordinates.
- * @param pSize Length of coordinate array.
- * @param q Second euclidian point coordinates.
- *        Dimension must not be smaller than that of p.
- *        Any extra dimensions will be ignored.
- * @return Squared euclidian distance of p and q.
- * @see #sqrEuclidianDist
- */
-/*
-static float euclid(float *p, int pSize, float *q)
-{
-    return (float)sqrt(sqrEuclidianDist(p, pSize, q));
-}
-*/
-
-/**
- * Computes Euclidian distance of two RGB color values.
- *
- * @param rgb0 First color value.
- * @param rgb1 Second color value.
- * @return Euclidian distance between the two color values.
- */
-/*
-static float colordiff(long rgb0, long rgb1)
-{
-    return (float)sqrt(colordiffsq(rgb0, rgb1));
-}
-*/
-
-/**
- * Computes squared euclidian distance of two RGB color values.
- * <P>
- * Note: Faster to compute than colordiff
- *
- * @param rgb0 First color value.
- * @param rgb1 Second color value.
- * @return Squared Euclidian distance between the two color values.
- */
-/*
-static float colordiffsq(long rgb0, long rgb1)
-{
-    int rDist=getRed(rgb0)   - getRed(rgb1);
-    int gDist=getGreen(rgb0) - getGreen(rgb1);
-    int bDist=getBlue(rgb0)  - getBlue(rgb1);
-
-    return (float)(rDist*rDist+gDist*gDist+bDist*bDist);
-}
-*/
-
-/**
- * Averages two ARGB colors.
- *
- * @param argb0 First color value.
- * @param argb1 Second color value.
- * @return The averaged ARGB color.
- */
-/*
-static long average(long argb0, long argb1)
-{
-    long ret = packPixel(
-         (getAlpha(argb0) + getAlpha(argb1))/2,
-         (getRed(argb0)   + getRed(argb1)  )/2,
-         (getGreen(argb0) + getGreen(argb1))/2,
-         (getBlue(argb0)  + getBlue(argb1) )/2);
-    return ret;
-}
-*/
-
-/**
- * Computes squared euclidian distance in CLAB space for two colors
- * given as RGB values.
- *
- * @param rgb0 First color value.
- * @param rgb1 Second color value.
- * @return Squared Euclidian distance in CLAB space.
- */
-static float labcolordiffsq(long rgb1, long rgb2)
-{
-    CLAB c1 = rgbToClab(rgb1);
-    CLAB c2 = rgbToClab(rgb2);
-    float euclid=0.0f;
-    euclid += (c1.L - c2.L) * (c1.L - c2.L);
-    euclid += (c1.A - c2.A) * (c1.A - c2.A);
-    euclid += (c1.B - c2.B) * (c1.B - c2.B);
-    return euclid;
-}
-
-
-/**
- * Computes squared euclidian distance in CLAB space for two colors
- * given as RGB values.
- *
- * @param rgb0 First color value.
- * @param rgb1 Second color value.
- * @return Euclidian distance in CLAB space.
- */
-static float labcolordiff(long rgb0, long rgb1)
-{
-    return (float)sqrt(labcolordiffsq(rgb0, rgb1));
-}
-
-
-/**
- * Converts 24-bit RGB values to {l,a,b} float values.
- * <P>
- * The conversion used is decribed at
- * <a href="http://www.easyrgb.com/math.php?MATH=M7#text7">CLAB Conversion</a>
- * for reference white D65. Note that that the conversion is computational
- * expensive. Result are cached to speed up further conversion calls.
- *
- * @param rgb RGB color value,
- * @return CLAB color value tripel.
- */
-static CLAB rgbToClab(long rgb)
-{
-    std::map<long, CLAB>::iterator iter = RGB_TO_LAB.find(rgb);
-    if (iter != RGB_TO_LAB.end())
-        {
-        CLAB res = iter->second;
-        return res;
-        }
-
-    int R=getRed(rgb);
-    int G=getGreen(rgb);
-    int B=getBlue(rgb);
-
-    float var_R=(R/255.0f); //R = From 0 to 255
-    float var_G=(G/255.0f); //G = From 0 to 255
-    float var_B=(B/255.0f); //B = From 0 to 255
-
-    if (var_R>0.04045)
-        var_R=(float) pow((var_R+0.055f)/1.055f, 2.4);
-    else
-        var_R=var_R/12.92f;
-
-    if (var_G>0.04045)
-        var_G=(float) pow((var_G+0.055f)/1.055f, 2.4);
-    else
-        var_G=var_G/12.92f;
-
-    if (var_B>0.04045)
-        var_B=(float) pow((var_B+0.055f)/1.055f, 2.4);
-    else
-        var_B=var_B/12.92f;
-
-    var_R=var_R*100.0f;
-    var_G=var_G*100.0f;
-    var_B=var_B*100.0f;
-
-    // Observer. = 2�, Illuminant = D65
-    float X=var_R*0.4124f + var_G*0.3576f + var_B*0.1805f;
-    float Y=var_R*0.2126f + var_G*0.7152f + var_B*0.0722f;
-    float Z=var_R*0.0193f + var_G*0.1192f + var_B*0.9505f;
-
-    float var_X=X/95.047f;
-    float var_Y=Y/100.0f;
-    float var_Z=Z/108.883f;
-
-    if (var_X>0.008856f)
-        var_X=(float) pow(var_X, 0.3333f);
-    else
-        var_X=(7.787f*var_X)+(16.0f/116.0f);
-
-    if (var_Y>0.008856f)
-        var_Y=(float) pow(var_Y, 0.3333f);
-    else
-        var_Y=(7.787f*var_Y)+(16.0f/116.0f);
-
-    if (var_Z>0.008856f)
-        var_Z=(float) pow(var_Z, 0.3333f);
-    else
-        var_Z=(7.787f*var_Z)+(16.0f/116.0f);
-
-    CLAB lab((116.0f*var_Y)-16.0f , 500.0f*(var_X-var_Y), 200.0f*(var_Y-var_Z));
-
-    RGB_TO_LAB[rgb] = lab;
-
-    return lab;
-}
-
-/**
- * Converts an CLAB value to a RGB color value.
- * <P>
- * This is the reverse operation to rgbToClab.
- * @param clab CLAB value.
- * @return RGB value.
- * @see #rgbToClab
- */
-/*
-static long clabToRGB(const CLAB &clab)
-{
-    float L=clab.L;
-    float a=clab.A;
-    float b=clab.B;
-
-    float var_Y=(L+16.0f)/116.0f;
-    float var_X=a/500.0f+var_Y;
-    float var_Z=var_Y-b/200.0f;
-
-    float var_yPow3=(float)pow(var_Y, 3.0);
-    float var_xPow3=(float)pow(var_X, 3.0);
-    float var_zPow3=(float)pow(var_Z, 3.0);
-
-    if (var_yPow3>0.008856f)
-        var_Y=var_yPow3;
-    else
-        var_Y=(var_Y-16.0f/116.0f)/7.787f;
-
-    if (var_xPow3>0.008856f)
-        var_X=var_xPow3;
-    else
-        var_X=(var_X-16.0f/116.0f)/7.787f;
-
-    if (var_zPow3>0.008856f)
-        var_Z=var_zPow3;
-    else
-        var_Z=(var_Z-16.0f/116.0f)/7.787f;
-
-    float X=95.047f  * var_X; //ref_X= 95.047  Observer=2�, Illuminant=D65
-    float Y=100.0f   * var_Y; //ref_Y=100.000
-    float Z=108.883f * var_Z; //ref_Z=108.883
-
-    var_X=X/100.0f; //X = From 0 to ref_X
-    var_Y=Y/100.0f; //Y = From 0 to ref_Y
-    var_Z=Z/100.0f; //Z = From 0 to ref_Y
-
-    float var_R=(float)(var_X *  3.2406f + var_Y * -1.5372f + var_Z * -0.4986f);
-    float var_G=(float)(var_X * -0.9689f + var_Y *  1.8758f + var_Z *  0.0415f);
-    float var_B=(float)(var_X *  0.0557f + var_Y * -0.2040f + var_Z *  1.0570f);
-
-    if (var_R>0.0031308f)
-        var_R=(float)(1.055f*pow(var_R, (1.0f/2.4f))-0.055f);
-    else
-        var_R=12.92f*var_R;
-
-    if (var_G>0.0031308f)
-        var_G=(float)(1.055f*pow(var_G, (1.0f/2.4f))-0.055f);
-    else
-        var_G=12.92f*var_G;
-
-    if (var_B>0.0031308f)
-        var_B=(float)(1.055f*pow(var_B, (1.0f/2.4f))-0.055f);
-    else
-        var_B=12.92f*var_B;
-
-    int R = (int)lround(var_R*255.0f);
-    int G = (int)lround(var_G*255.0f);
-    int B = (int)lround(var_B*255.0f);
-
-    return packPixel(0xFF, R, G, B);
-}
-*/
-
-/**
- * Sets the alpha byte of a pixel.
- *
- * Constructs alpha to values from 0 to 255.
- * @param alpha Alpha value from 0 (transparent) to 255 (opaque).
- * @param rgb The 24bit rgb color to be combined with the alpga value.
- * @return An ARBG calor value.
- */
-static long setAlpha(int alpha, long rgb)
-{
-    if (alpha>255)
-        alpha=0;
-    else if (alpha<0)
-        alpha=0;
-    return (alpha<<24)|(rgb&0xFFFFFF);
-}
-
-/**
- * Sets the alpha byte of a pixel.
- *
- * Constricts alpha to values from 0 to 255.
- * @param alpha Alpha value from 0.0f (transparent) to 1.0f (opaque).
- * @param rgb The 24bit rgb color to be combined with the alpga value.
- * @return An ARBG calor value.
- */
-static long setAlpha(float alpha, long rgb)
-{
-    return setAlpha((int)(255.0f*alpha), rgb);
-}
-
-/**
- * Limits the values of a,r,g,b to values from 0 to 255 and puts them
- * together into an 32 bit integer.
- *
- * @param a Alpha part, the first byte.
- * @param r Red part, the second byte.
- * @param g Green part, the third byte.
- * @param b Blue part, the fourth byte.
- * @return A ARBG value packed to an int.
- */
-/*
-static long packPixel(int a, int r, int g, int b)
-{
-    if (a<0)
-        a=0;
-    else if (a>255)
-        a=255;
-
-    if (r<0)
-        r=0;
-    else if (r>255)
-        r=255;
-
-    if (g<0)
-        g=0;
-    else if (g>255)
-        g=255;
-
-    if (b<0)
-        b=0;
-    else if (b>255)
-        b=255;
-
-    return (a<<24)|(r<<16)|(g<<8)|b;
-}
-*/
-
-/**
- * Returns the alpha component of an ARGB value.
- *
- * @param argb An ARGB color value.
- * @return The alpha component, ranging from 0 to 255.
- */
-/*
-static int getAlpha(long argb)
-{
-    return (argb>>24)&0xFF;
-}
-*/
-
-/**
- * Returns the red component of an (A)RGB value.
- *
- * @param rgb An (A)RGB color value.
- * @return The red component, ranging from 0 to 255.
- */
-static int getRed(long rgb)
-{
-    return (rgb>>16)&0xFF;
-}
-
-
-/**
- * Returns the green component of an (A)RGB value.
- *
- * @param rgb An (A)RGB color value.
- * @return The green component, ranging from 0 to 255.
- */
-static int getGreen(long rgb)
-{
-    return (rgb>>8)&0xFF;
-}
-
-/**
- * Returns the blue component of an (A)RGB value.
- *
- * @param rgb An (A)RGB color value.
- * @return The blue component, ranging from 0 to 255.
- */
-static int getBlue(long rgb)
-{
-    return (rgb)&0xFF;
-}
-
-/**
- * Returns a string representation of a CLAB value.
- *
- * @param clab The CLAB value.
- * @param clabSize Size of the CLAB value.
- * @return A string representation of the CLAB value.
- */
-/*
-static std::string clabToString(const CLAB &clab)
-{
-    std::string buff;
-    char nbuf[60];
-    snprintf(nbuf, 59, "%5.3f, %5.3f, %5.3f", clab.L, clab.A, clab.B);
-    buff = nbuf;
-    return buff;
-}
-*/
-
-//########################################################################
-//##  C O L O R    S I G N A T U R E    (originally ColorSignature.java)
-//########################################################################
-
-/**
- * Representation of a color signature.
- * <br><br>
- * This class implements a clustering algorithm based on a modified kd-tree.
- * The splitting rule is to simply divide the given interval into two equally
- * sized subintervals.
- * In the <code>stageone()</code>, approximate clusters are found by building
- * up such a tree and stopping when an interval at a node has become smaller
- * than the allowed cluster diameter, which is given by <code>limits</code>.
- * At this point, clusters may be split in several nodes.<br>
- * Therefore, in <code>stagetwo()</code>, nodes that belong to several clusters
- * are recombined by another k-d tree clustering on the prior cluster
- * centroids. To guarantee a proper level of abstraction, clusters that contain
- * less than 0.01% of the pixels of the entire sample are removed. Please
- * refer to the file NOTICE to get links to further documentation.
- *
- * @author Gerald Friedland, Lars Knipping
- * @version 1.02
- *
- * Conversion to C++ by Bob Jamison
- *
- */
-
-/**
- * Stage one of clustering.
- * @param points float[][] the input points in LAB space
- * @param depth int used for recursion, start with 0
- * @param clusters ArrayList an Arraylist to store the clusters
- * @param limits float[] the cluster diameters
- */
-static void stageone(std::vector<CLAB> &points,
-                     int depth,
-                     std::vector< std::vector<CLAB> > &clusters,
-                     float *limits)
-{
-    if (points.size() < 1)
-        return;
-
-    int dims=3;
-    int curdim=depth%dims;
-    float min = 0.0f;
-    float max = 0.0f;
-    if (curdim == 0)
-        {
-        min=points[0].C;
-        max=points[0].C;
-        // find maximum and minimum
-        for (unsigned int i=1; i<points.size(); i++) {
-            if (min>points[i].C)
-                min=points[i].C;
-            if (max<points[i].C)
-                max=points[i].C;
-            }
-        }
-    else if (curdim == 1)
-        {
-        min=points[0].L;
-        max=points[0].L;
-        // find maximum and minimum
-        for (unsigned int i=1; i<points.size(); i++) {
-            if (min>points[i].L)
-                min=points[i].L;
-            if (max<points[i].L)
-                max=points[i].L;
-            }
-        }
-    else if (curdim == 2)
-        {
-        min=points[0].A;
-        max=points[0].A;
-        // find maximum and minimum
-        for (unsigned int i=1; i<points.size(); i++) {
-            if (min>points[i].A)
-                min=points[i].A;
-            if (max<points[i].A)
-                max=points[i].A;
-            }
-        }
-    else if (curdim == 3)
-        {
-        min=points[0].B;
-        max=points[0].B;
-        // find maximum and minimum
-        for (unsigned int i=1; i<points.size(); i++) {
-            if (min>points[i].B)
-                min=points[i].B;
-            if (max<points[i].B)
-                max=points[i].B;
-            }
-        }
-
-    if (max-min>limits[curdim]) { // Split according to Rubner-Rule
-        // split
-        float pivotvalue=((max-min)/2.0f)+min;
-
-        std::vector<CLAB> smallerpoints; // allocate mem
-        std::vector<CLAB> biggerpoints;
-
-        for (unsigned int i=0; i<points.size(); i++) { // do actual split
-            float v = 0.0f;
-            if (curdim==0)
-                v = points[i].C;
-            else if (curdim==1)
-                v = points[i].L;
-            else if (curdim==2)
-                v = points[i].A;
-            else if (curdim==3)
-                v = points[i].B;
-            if (v <= pivotvalue) {
-                smallerpoints.push_back(points[i]);
-            } else {
-                biggerpoints.push_back(points[i]);
-            }
-        } // create subtrees
-        stageone(smallerpoints, depth+1, clusters, limits);
-        stageone(biggerpoints,  depth+1, clusters, limits);
-    } else { // create leave
-        clusters.push_back(points);
-    }
-}
-
-/**
- * Stage two of clustering.
- * @param points float[][] the input points in LAB space
- * @param depth int used for recursion, start with 0
- * @param clusters ArrayList an Arraylist to store the clusters
- * @param limits float[] the cluster diameters
- * @param total int the total number of points as given to stageone
- * @param threshold should be 0.01 - abstraction threshold
- */
-static void stagetwo(std::vector<CLAB> &points,
-                     int depth,
-                     std::vector< std::vector<CLAB> > &clusters,
-                     float *limits, int total, float threshold)
-{
-    if (points.size() < 1)
-        return;
-
-    int curdim=depth%3; // without cardinality
-    float min = 0.0f;
-    float max = 0.0f;
-    if (curdim == 0)
-        {
-        min=points[0].L;
-        max=points[0].L;
-        // find maximum and minimum
-        for (unsigned int i=1; i<points.size(); i++) {
-            if (min>points[i].L)
-                min=points[i].L;
-            if (max<points[i].L)
-                max=points[i].L;
-            }
-        }
-    else if (curdim == 1)
-        {
-        min=points[0].A;
-        max=points[0].A;
-        // find maximum and minimum
-        for (unsigned int i=1; i<points.size(); i++) {
-            if (min>points[i].A)
-                min=points[i].A;
-            if (max<points[i].A)
-                max=points[i].A;
-            }
-        }
-    else if (curdim == 2)
-        {
-        min=points[0].B;
-        max=points[0].B;
-        // find maximum and minimum
-        for (unsigned int i=1; i<points.size(); i++) {
-            if (min>points[i].B)
-                min=points[i].B;
-            if (max<points[i].B)
-                max=points[i].B;
-            }
-        }
-
-
-    if (max-min>limits[curdim]) { // Split according to Rubner-Rule
-        // split
-        float pivotvalue=((max-min)/2.0f)+min;
-
-        std::vector<CLAB> smallerpoints; // allocate mem
-        std::vector<CLAB> biggerpoints;
-
-        for (unsigned int i=0; i<points.size(); i++) { // do actual split
-            float v = 0.0f;
-	    if (curdim==0)
-	        v = points[i].L;
-	    else if (curdim==1)
-	        v = points[i].A;
-	    else if (curdim==2)
-	        v = points[i].B;
-
-            if (v <= pivotvalue) {
-                smallerpoints.push_back(points[i]);
-            } else {
-                biggerpoints.push_back(points[i]);
-            }
-        } // create subtrees
-        stagetwo(smallerpoints, depth+1, clusters, limits, total, threshold);
-        stagetwo(biggerpoints,  depth+1, clusters, limits, total, threshold);
-    } else { // create leave
-        float sum=0.0;
-        for (unsigned int i=0; i<points.size(); i++) {
-            sum+=points[i].B;
-        }
-        if (((sum*100.0)/total)>=threshold) {
-            CLAB point;
-            for (unsigned int i=0; i<points.size(); i++) {
-                point.C += points[i].C;
-                point.L += points[i].L;
-                point.A += points[i].A;
-                point.B += points[i].B;
-            }
-            point.C /= points.size();
-            point.L /= points.size();
-            point.A /= points.size();
-            point.B /= points.size();
-
-            std::vector<CLAB> newCluster;
-            newCluster.push_back(point);
-            clusters.push_back(newCluster);
-        }
-    }
-}
-
-/**
- * Create a color signature for the given set of pixels.
- * @param input float[][] a set of pixels in LAB space
- * @param length int the number of pixels that should be processed from the input
- * @param limits float[] the cluster diameters for each dimension
- * @param threshold float the abstraction threshold
- * @return float[][] a color siganture containing cluster centroids in LAB space
- */
-static std::vector<CLAB> createSignature(std::vector<CLAB> &input,
-                                         float *limits, float threshold)
-{
-    std::vector< std::vector<CLAB> > clusters1;
-    std::vector< std::vector<CLAB> > clusters2;
-
-    stageone(input, 0, clusters1, limits);
-
-    std::vector<CLAB> centroids;
-    for (unsigned int i=0; i<clusters1.size(); i++) {
-        std::vector<CLAB> cluster = clusters1[i];
-        CLAB centroid; // +1 for the cardinality
-        for (unsigned int k=0; k<cluster.size(); k++) {
-            centroid.L += cluster[k].L;
-            centroid.A += cluster[k].A;
-            centroid.B += cluster[k].B;
-        }
-        centroid.C =  cluster.size();
-        centroid.L /= cluster.size();
-        centroid.A /= cluster.size();
-        centroid.B /= cluster.size();
-
-        centroids.push_back(centroid);
-    }
-    stagetwo(centroids, 0, clusters2, limits, input.size(), threshold); // 0.1 -> see paper by tomasi
-
-    std::vector<CLAB> res;
-    for (unsigned int i=0 ; i<clusters2.size() ; i++)
-        for (unsigned int j=0 ; j<clusters2[i].size() ; j++)
-            res.push_back(clusters2[i][j]);
-
-    return res;
-}
-
-
-
-//########################################################################
-//##  S I O X  S E G M E N T A T O R    (originally SioxSegmentator.java)
-//########################################################################
-
-//### NOTE: Doxygen comments are in siox-segmentator.h
-
-
-SioxSegmentator::SioxSegmentator(int w, int h, float *limitsArg, int limitsSize)
-{
-
-    imgWidth   = w;
-    imgHeight  = h;
-    labelField = new int[imgWidth*imgHeight];
-
-    if (!limitsArg) {
-        limits = new float[3];
-        limits[0] = 0.64f;
-        limits[1] = 1.28f;
-        limits[2] = 2.56f;
-    } else {
-        limits = new float[limitsSize];
-        for (int i=0 ; i<limitsSize ; i++)
-            limits[i] = limitsArg[i];
-    }
-
-    float negLimits[3];
-    negLimits[0] = -limits[0];
-    negLimits[1] = -limits[1];
-    negLimits[2] = -limits[2];
-    clusterSize = sqrEuclidianDist(limits, 3, negLimits);
-
-    segmentated=false;
-
-    origImage = NULL;
-}
-
-SioxSegmentator::~SioxSegmentator()
-{
-    delete labelField;
-    delete limits;
-    delete origImage;
-}
-
-
-/**
- * Error logging
- */
-void SioxSegmentator::error(char *fmt, ...)
-{
-    va_list args;
-    fprintf(stderr, "SioxSegmentator error:");
-    va_start(args, fmt);
-    vfprintf(stderr, fmt, args);
-    va_end(args) ;
-    fprintf(stderr, "\n");
-}
-
-/**
- * Trace logging
- */
-void SioxSegmentator::trace(char *fmt, ...)
-{
-    va_list args;
-    fprintf(stderr, "SioxSegmentator:");
-    va_start(args, fmt);
-    vfprintf(stderr, fmt, args);
-    va_end(args) ;
-    fprintf(stderr, "\n");
-}
-
-
-
-bool SioxSegmentator::segmentate(long *image, int imageSize,
-                                 float *cm, int cmSize,
-                                 int smoothness, double sizeFactorToKeep)
-{
-    segmentated=false;
-
-    hs.clear();
-
-    // save image for drb
-    origImage=new long[imageSize];
-    for (int i=0 ; i<imageSize ; i++)
-        origImage[i] = image[i];
-
-    // create color signatures
-    for (int i=0; i<cmSize; i++) {
-        if (cm[i]<=BACKGROUND_CONFIDENCE)
-            knownBg.push_back(rgbToClab(image[i]));
-        else if (cm[i]>=FOREGROUND_CONFIDENCE)
-            knownFg.push_back(rgbToClab(image[i]));
-    }
-
-    bgSignature = createSignature(knownBg, limits, BACKGROUND_CONFIDENCE);
-    fgSignature = createSignature(knownFg, limits, BACKGROUND_CONFIDENCE);
-
-    if (bgSignature.size() < 1) {
-        // segmentation impossible
-        return false;
-    }
-
-    // classify using color signatures,
-    // classification cached in hashmap for drb and speedup purposes
-    for (int i=0; i<cmSize; i++) {
-        if (cm[i]>=FOREGROUND_CONFIDENCE) {
-            cm[i]=CERTAIN_FOREGROUND_CONFIDENCE;
-            continue;
-        }
-        if (cm[i]>BACKGROUND_CONFIDENCE) {
-            bool isBackground=true;
-            std::map<long, Tupel>::iterator iter = hs.find(i);
-            Tupel tupel(0.0f, 0, 0.0f, 0);
-            if (iter == hs.end()) {
-                CLAB lab = rgbToClab(image[i]);
-                float minBg = sqrEuclidianDist(lab, bgSignature[0]);
-                int minIndex=0;
-                for (unsigned int j=1; j<bgSignature.size(); j++) {
-                    float d = sqrEuclidianDist(lab, bgSignature[j]);
-                    if (d<minBg) {
-                        minBg=d;
-                        minIndex=j;
-                    }
-                }
-                tupel.minBgDist=minBg;
-                tupel.indexMinBg=minIndex;
-                float minFg = 1.0e6f;
-                minIndex=-1;
-                for (unsigned int j=0 ; j<fgSignature.size() ; j++) {
-                    float d = sqrEuclidianDist(lab, fgSignature[j]);
-                    if (d<minFg) {
-                        minFg=d;
-                        minIndex=j;
-                    }
-                }
-                tupel.minFgDist=minFg;
-                tupel.indexMinFg=minIndex;
-                if (fgSignature.size()==0) {
-                    isBackground=(minBg<=clusterSize);
-                    // remove next line to force behaviour of old algorithm
-                    error("foreground signature does not exist");
-                    return false;
-                } else {
-                    isBackground=minBg<minFg;
-                }
-                hs[image[i]] = tupel;
-            } else {
-                isBackground=tupel.minBgDist<=tupel.minFgDist;
-            }
-            if (isBackground) {
-                cm[i]=CERTAIN_BACKGROUND_CONFIDENCE;
-            } else {
-                cm[i]=CERTAIN_FOREGROUND_CONFIDENCE;
-            }
-        } else {
-            cm[i]=CERTAIN_BACKGROUND_CONFIDENCE;
-        }
-    }
-
-    // postprocessing
-    smoothcm(cm, imgWidth, imgHeight, 0.33f, 0.33f, 0.33f); // average
-    normalizeMatrix(cm, cmSize);
-    erode(cm, imgWidth, imgHeight);
-    keepOnlyLargeComponents(cm, cmSize, UNKNOWN_REGION_CONFIDENCE, sizeFactorToKeep);
-
-    for (int i=0; i<smoothness; i++) {
-        smoothcm(cm, imgWidth, imgHeight, 0.33f, 0.33f, 0.33f); // average
-    }
-
-    normalizeMatrix(cm, cmSize);
-
-    for (int i=0; i<cmSize; i++) {
-        if (cm[i]>=UNKNOWN_REGION_CONFIDENCE) {
-            cm[i]=CERTAIN_FOREGROUND_CONFIDENCE;
-        } else {
-            cm[i]=CERTAIN_BACKGROUND_CONFIDENCE;
-        }
-    }
-
-    keepOnlyLargeComponents(cm, cmSize, UNKNOWN_REGION_CONFIDENCE, sizeFactorToKeep);
-    fillColorRegions(cm, cmSize, image);
-    dilate(cm, imgWidth, imgHeight);
-
-    segmentated=true;
-    return true;
-}
-
-
-
-void SioxSegmentator::keepOnlyLargeComponents(float *cm, int cmSize,
-                                              float threshold,
-                                              double sizeFactorToKeep)
-{
-    int idx = 0;
-    for (int i=0 ; i<imgHeight ; i++)
-        for (int j=0 ; j<imgWidth ; j++)
-            labelField[idx++] = -1;
-
-    int curlabel = 0;
-    int maxregion= 0;
-    int maxblob  = 0;
-
-    // slow but easy to understand:
-    std::vector<int> labelSizes;
-    for (int i=0 ; i<cmSize ; i++) {
-        regionCount=0;
-        if (labelField[i]==-1 && cm[i]>=threshold) {
-            regionCount=depthFirstSearch(cm, i, threshold, curlabel++);
-            labelSizes.push_back(regionCount);
-        }
-
-        if (regionCount>maxregion) {
-            maxregion=regionCount;
-            maxblob=curlabel-1;
-        }
-    }
-
-    for (int i=0 ; i<cmSize ; i++) {
-        if (labelField[i]!=-1) {
-            // remove if the component is to small
-            if (labelSizes[labelField[i]]*sizeFactorToKeep < maxregion)
-                cm[i]=CERTAIN_BACKGROUND_CONFIDENCE;
-
-            // add maxblob always to foreground
-            if (labelField[i]==maxblob)
-                cm[i]=CERTAIN_FOREGROUND_CONFIDENCE;
-        }
-    }
-}
-
-
-
-int SioxSegmentator::depthFirstSearch(float *cm, int i, float threshold, int curLabel)
-{
-    // stores positions of labeled pixels, where the neighbours
-    // should still be checked for processing:
-    std::vector<int> pixelsToVisit;
-    int componentSize=0;
-    if (labelField[i]==-1 && cm[i]>=threshold) { // label #i
-        labelField[i] = curLabel;
-        ++componentSize;
-        pixelsToVisit.push_back(i);
-    }
-    while (pixelsToVisit.size() > 0) {
-        int pos=pixelsToVisit[pixelsToVisit.size()-1];
-        pixelsToVisit.erase(pixelsToVisit.end()-1);
-        int x=pos%imgWidth;
-        int y=pos/imgWidth;
-        // check all four neighbours
-        int left = pos-1;
-        if (x-1>=0 && labelField[left]==-1 && cm[left]>=threshold) {
-            labelField[left]=curLabel;
-            ++componentSize;
-            pixelsToVisit.push_back(left);
-        }
-        int right = pos+1;
-        if (x+1<imgWidth && labelField[right]==-1 && cm[right]>=threshold) {
-            labelField[right]=curLabel;
-            ++componentSize;
-            pixelsToVisit.push_back(right);
-        }
-        int top = pos-imgWidth;
-        if (y-1>=0 && labelField[top]==-1 && cm[top]>=threshold) {
-            labelField[top]=curLabel;
-            ++componentSize;
-            pixelsToVisit.push_back(top);
-        }
-        int bottom = pos+imgWidth;
-        if (y+1<imgHeight && labelField[bottom]==-1
-            && cm[bottom]>=threshold) {
-            labelField[bottom]=curLabel;
-            ++componentSize;
-            pixelsToVisit.push_back(bottom);
-        }
-    }
-    return componentSize;
-}
-
-void SioxSegmentator::subpixelRefine(int x, int y, int brushmode,
-                             float threshold, float *cf, int brushsize)
-{
-    subpixelRefine(x-brushsize, y-brushsize,
-                   2*brushsize, 2*brushsize,
-                   brushmode, threshold, cf);
-}
-
-
-bool SioxSegmentator::subpixelRefine(int xa, int ya, int dx, int dy,
-                                     int brushmode,
-                                     float threshold, float *cf)
-{
-    if (!segmentated) {
-        error("no segmentation yet");
-        return false;
-    }
-
-    int x0 = (xa > 0) ? xa : 0;
-    int y0 = (ya > 0) ? ya : 0;
-
-    int xTo = (imgWidth  - 1 < xa+dx ) ? imgWidth-1  : xa+dx;
-    int yTo = (imgHeight - 1 < ya+dy ) ? imgHeight-1 : ya+dy;
-
-    for (int ey=y0; ey<yTo; ++ey) {
-        for (int ex=x0; ex<xTo; ++ex) {
-            /*  we are using a rect, not necessary
-            if (!area.contains(ex, ey)) {
-                continue;
-            }
-            */
-            long val=origImage[ey*imgWidth+ex];
-            long orig=val;
-            float minDistBg = 0.0f;
-            float minDistFg = 0.0f;
-            std::map<long, Tupel>::iterator iter = hs.find(val);
-            if (iter != hs.end()) {
-                minDistBg=(float) sqrt((float)iter->second.minBgDist);
-                minDistFg=(float) sqrt((float)iter->second.minFgDist);
-            } else {
-                continue;
-            }
-            if (ADD_EDGE == brushmode) { // handle adder
-                if (cf[ey*imgWidth+ex]<FOREGROUND_CONFIDENCE) { // postprocessing wins
-                  float alpha;
-                  if (minDistFg==0) {
-                      alpha=CERTAIN_FOREGROUND_CONFIDENCE;
-                  } else {
-                      alpha = (minDistBg/minDistFg < CERTAIN_FOREGROUND_CONFIDENCE) ?
-                          minDistBg/minDistFg : CERTAIN_FOREGROUND_CONFIDENCE;
-                  }
-                  if (alpha<threshold) { // background with certain confidence decided by user.
-                      alpha=CERTAIN_BACKGROUND_CONFIDENCE;
-                  }
-                  val = setAlpha(alpha, orig);
-                  cf[ey*imgWidth+ex]=alpha;
-                }
-            } else if (SUB_EDGE == brushmode) { // handle substractor
-                if (cf[ey*imgWidth+ex]>FOREGROUND_CONFIDENCE) {
-                    // foreground, we want to take something away
-                    float alpha;
-                    if (minDistBg==0) {
-                        alpha=CERTAIN_BACKGROUND_CONFIDENCE;
-                    } else {
-                        alpha=CERTAIN_FOREGROUND_CONFIDENCE-
-                            (minDistFg/minDistBg < CERTAIN_FOREGROUND_CONFIDENCE) ? // more background -> >1
-                             minDistFg/minDistBg : CERTAIN_FOREGROUND_CONFIDENCE;
-                        // bg = gf -> 1
-                        // more fg -> <1
-                    }
-                    if (alpha<threshold) { // background with certain confidence decided by user
-                        alpha=CERTAIN_BACKGROUND_CONFIDENCE;
-                    }
-                    val = setAlpha(alpha, orig);
-                    cf[ey*imgWidth+ex]=alpha;
-                }
-            } else {
-                error("unknown brush mode: %d", brushmode);
-                return false;
-            }
-        }
-    }
-    return true;
-}
-
-
-
-void SioxSegmentator::fillColorRegions(float *cm, int cmSize, long *image)
-{
-    int idx = 0;
-    for (int i=0 ; i<imgHeight ; i++)
-        for (int j=0 ; i<imgWidth ; j++)
-            labelField[idx++] = -1;
-
-    //int maxRegion=0; // unused now
-    std::vector<int> pixelsToVisit;
-    for (int i=0; i<cmSize; i++) { // for all pixels
-        if (labelField[i]!=-1 || cm[i]<UNKNOWN_REGION_CONFIDENCE) {
-            continue; // already visited or bg
-        }
-        int origColor=image[i];
-        int curLabel=i+1;
-        labelField[i]=curLabel;
-        cm[i]=CERTAIN_FOREGROUND_CONFIDENCE;
-        // int componentSize = 1;
-        pixelsToVisit.push_back(i);
-        // depth first search to fill region
-        while (pixelsToVisit.size() > 0) {
-            int pos=pixelsToVisit[pixelsToVisit.size()-1];
-            pixelsToVisit.erase(pixelsToVisit.end()-1);
-            int x=pos%imgWidth;
-            int y=pos/imgWidth;
-            // check all four neighbours
-            int left = pos-1;
-            if (x-1>=0 && labelField[left]==-1
-                && labcolordiff(image[left], origColor)<1.0) {
-                labelField[left]=curLabel;
-                cm[left]=CERTAIN_FOREGROUND_CONFIDENCE;
-                // ++componentSize;
-                pixelsToVisit.push_back(left);
-            }
-            int right = pos+1;
-            if (x+1<imgWidth && labelField[right]==-1
-                && labcolordiff(image[right], origColor)<1.0) {
-                labelField[right]=curLabel;
-                cm[right]=CERTAIN_FOREGROUND_CONFIDENCE;
-                // ++componentSize;
-                pixelsToVisit.push_back(right);
-            }
-            int top = pos-imgWidth;
-            if (y-1>=0 && labelField[top]==-1
-                && labcolordiff(image[top], origColor)<1.0) {
-                labelField[top]=curLabel;
-                cm[top]=CERTAIN_FOREGROUND_CONFIDENCE;
-                // ++componentSize;
-                pixelsToVisit.push_back(top);
-            }
-            int bottom = pos+imgWidth;
-            if (y+1<imgHeight && labelField[bottom]==-1
-                && labcolordiff(image[bottom], origColor)<1.0) {
-                labelField[bottom]=curLabel;
-                cm[bottom]=CERTAIN_FOREGROUND_CONFIDENCE;
-                // ++componentSize;
-                pixelsToVisit.push_back(bottom);
-            }
-        }
-        //if (componentSize>maxRegion) {
-        //    maxRegion=componentSize;
-        //}
-    }
-}
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-} //namespace siox
-} //namespace org
-
-
-